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  "Package": "CleaningValidation",
  "Version": "1.0",
  "Title": "Cleaning Validation Functions for Pharmaceutical Cleaning\nProcess",
  "Authors@R": "c(\nperson(\"Mohamed Chan\", role = \"aut\"),\nperson(\"Wendy Lou\", role = \"aut\"),\nperson(\"Xiande Yang\", email = \"xyang1@apotex.com\", role = c(\"aut\", \"cre\"))\n)",
  "Description": "Provides essential Cleaning Validation functions for\ncomplying with pharmaceutical cleaning process regulatory\nstandards. The package includes non-parametric methods to\nanalyze drug active-ingredient residue (DAR), cleaning agent\nresidue (CAR), and microbial colonies (Mic) for non-Poisson\ndistributions. Additionally, Poisson methods are provided for\nMic analysis when Mic data follow a Poisson distribution.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.1",
  "Author": "Mohamed Chan [aut], Wendy Lou [aut], Xiande Yang [aut, cre]",
  "Maintainer": "Xiande Yang <xyang1@apotex.com>",
  "URL": "https://github.com/ChandlerXiandeYang/CleaningValidation",
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  "Repository": "https://chandlerxiandeyang.r-universe.dev",
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    "cv04_histogram_kde",
    "cv05_sw_norm_test_1",
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    "cv23_random_effect_coef",
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    "cv25_qbinom_ppu",
    "cv26_qpoisson_ppu",
    "cv27_anscombe_ppu",
    "cv28_freeman_ppu",
    "cv29_mic_ppu",
    "cv30_dar_car_mic_ppu",
    "Eq_CAR",
    "Eq_DAR",
    "Eq_Mic"
  ],
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    {
      "page": "CleaningValidation",
      "title": "Cleaning Validation Package",
      "topics": [
        "CleaningValidation",
        "CV"
      ]
    },
    {
      "page": "cv01_dfclean",
      "title": "Clean and preprocess residue data for stability and capability analysis",
      "topics": [
        "cv01_dfclean"
      ]
    },
    {
      "page": "cv02_nonpro_oos_reswab",
      "title": "Summarize Non-Process Related OOS and Reswab Data Which May Not Be Included in the Analysis",
      "topics": [
        "cv02_nonpro_oos_reswab"
      ]
    },
    {
      "page": "cv03_usl_unification",
      "title": "Unify USL Percentages for Specified Residue",
      "topics": [
        "cv03_usl_unification"
      ]
    },
    {
      "page": "cv04_histogram_kde",
      "title": "Plot Histogram with Kernel Density Estimate Curve",
      "topics": [
        "cv04_histogram_kde"
      ]
    },
    {
      "page": "cv05_sw_norm_test_1",
      "title": "Perform Shapiro-Wilk Normality Test",
      "topics": [
        "cv05_sw_norm_test_1"
      ]
    },
    {
      "page": "cv06_sw_norm_test_2",
      "title": "Perform Shapiro-Wilk Normality Test on Two Variables",
      "topics": [
        "cv06_sw_norm_test_2"
      ]
    },
    {
      "page": "cv07_median_control_chart",
      "title": "Median Control Chart and Density Plot",
      "topics": [
        "cv07_median_control_chart"
      ]
    },
    {
      "page": "cv071_median_control_chart",
      "title": "Median Control Chart",
      "topics": [
        "cv071_median_control_chart"
      ]
    },
    {
      "page": "cv08_variability_chart",
      "title": "Variability Chart for Cleaning Events",
      "topics": [
        "cv08_variability_chart"
      ]
    },
    {
      "page": "cv09_kw_test",
      "title": "Kruskal-Wallis Test for Residue Percentages",
      "topics": [
        "cv09_kw_test"
      ]
    },
    {
      "page": "cv10_dunn_test_vs_control",
      "title": "Dunn's Test for Residue",
      "topics": [
        "cv10_dunn_test_vs_control"
      ]
    },
    {
      "page": "cv11_vca_by_median",
      "title": "Variability Components Analysis by Median with Bootstrap",
      "topics": [
        "cv11_vca_by_median"
      ]
    },
    {
      "page": "cv12_kde_ppu",
      "title": "Calculate PPU using KDE density estimation",
      "topics": [
        "cv12_kde_ppu"
      ]
    },
    {
      "page": "cv13_poisson_test",
      "title": "Poisson Goodness-of-Fit Test",
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      ]
    },
    {
      "page": "cv14_dispersion_test",
      "title": "Dispersion Test for Poisson Regression Models",
      "topics": [
        "cv14_dispersion_test"
      ]
    },
    {
      "page": "cv15_mic_mutate",
      "title": "Calculate Mic Statistics",
      "topics": [
        "cv15_mic_mutate"
      ]
    },
    {
      "page": "cv16_u_chart",
      "title": "Create a u-Chart for Poisson-distributed Data",
      "topics": [
        "cv16_u_chart"
      ]
    },
    {
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        "cv17_cusum"
      ]
    },
    {
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      "title": "Exponentially Weighted Moving Average (EWMA) Chart",
      "topics": [
        "cv18_ewma"
      ]
    },
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      ]
    },
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